City of the Snakes takes place 10 years after Hell's Horizon and has two narrators throughout the story: Capac Raimi, and Al Jeery. The story begins with Capac Raimi struggling to maintain control of the city as the new Cardinal. Rival gang, the Kluxers, mi pursues his investigation and begins by visitting the resting place of Ferdinand Dorak, the former Cardinal, in the Fridge.
Once there, Raimi asks to be left alone in the Dorak's isolated resting place to investigate. He finds the delicate body of the ex-Cardinal in its proper place, and closes the lid of the coffin. As he turns around, the coffin slides from its position, revealing and underground passage from Dorak's chamber. Emerging from this passage is a fully naked Ama Situa, Capac's former Ayuamarcan lover. She gestures for Capac to hold her hand, and despite his bewilderment he follows her into the underground passage.
The middle and body of the story is then narrated by Al Jeery.
After Capac Raimi goes missing, Al Jerry is given a deal by a subtitute cardinal. Find Capac, and he will get information of Bill Casey. Rumours appear about a group called the snakes, who look, act and feel like Pucar Wami.
Meanwhile Al remeets the harpies, insane women who eat human flesh. One of them is called Rettie. Rettie was the girl that Bill saved instead of her sister, which is why Bill hated Paucar Wami. Al goes to kill him but he spares his life.
Later Al meets the snakes, who plan to take over the city for the Villacs. Also all the Ayuamaracans have two dolls not one so the Villacs can bring them back when they want.
Al goes to bill to get explosive's for the fight against the villacs.
Al-Jeery then goes with Ama Situwa and Pacur Wami to kill the vilacs along the way they are met by naked preisteses who worship the god of the moon at the end of their journey they meet the woman hiding behind the villacs a ancient god who contunues her legacy by dying then moving her soul into one of her offspring.She explains everything they find capac he is horribly mutilated left eye cut out and missing both ears pacur trys to grab his doll which was close but there was a inti watana stone shocking anyone who came near the god. All was done he theathened the coya to give him the dolls or he would blow the place up he got them and ran out with capac who went to kill the coya and ama.
Al gives Bill the Puacar Wami doll and Bill just hugs it, faintly remembering Puacar.
At the end Al settles down for a quiet life remebering all who he lost in his life and finally being happy